Molecular subtypes of human cancer
Cancers are typically classified depending on their tissue of origin. However, novel large-scale genomic studies are providing more detailed molecular characterizations of tumors, and thus bring about [...]
Mutual exclusion statistics and data events in Gitools
We’re pleased to announce another incremental release of Gitools, version 2.2. Amongst the many improvements (listed at the bottom of this post) we’d like to highlight the [...]
How to perform a hierarchical clustering using interactive heatmaps in Gitools
In the latest version of Gitools, version 2.1, we have improved the clustering of heatmaps. Here we explain in detail on how to perform and interpret the [...]
Gitools 2.1 visits VizBi
We’d like to communicate two things: We have released a new version of Gitools which brings new capabilities. With these the new Gitools 2.1.0 in the suitcase, [...]
VIZBI 2014: Visualizing Biological Data
Two years ago I attended the VIZBI 2012 to present our latest work on and with Gitools, a tool we use to explore interactive heatmaps of genomics [...]
The Cancer Genome Atlas Pan-Cancer Project
Yesterday the paper describing TCGA Pan-Cancer Project was published in Nature Genetics. We’ve had the opportunity to participate in this exciting project and here I would like [...]
Gitools in GenomeSpace and a new user mail list
As some already may know, Gitools has been integrated with GenomeSpace. Together with the GenomeSpace team we have set up a tutorial that demonstrates the power behind [...]
Gitools 1.8 for improved data managament and transfer
We have started to distribute Gitools in the version 1.8.x. This latest version include important new features in terms of communication of Gitools with other tools (i.e. [...]
Gitools 1.7.0: The new features
We have been preparing a new version of Gitools with many improvements, amongst which there is a new IGV search, the use of categorical scales and new [...]
Sample Level Enrichment Analysis (SLEA) Tutorial and Gitools 1.6.2
As you may have read in the last post, Günes and Nuria presented the Sample Level Enrichment Analysis (SLEA) as a methodology to analyse the transcription level [...]
