New IntOGen web to explore driver genes across cancer types
Coinciding with the publication of our latest paper, on Monday (9 March 2015) (See blog post) we have crafted a new IntOGen interface which presents the results of [...]
How to generate mutation distribution and frequency plots?
Let’s plot some mutations! Easy, right? For our next iteration of the IntOGen database, we wanted to add figures that represent the mutation distribution across the protein [...]
OncodriveROLE predicts activating and loss of function cancer driver genes
We are pleased to announce that the Oncodrive methods family has a new member: OncodriveROLE, an approach to classify cancer drivers into loss of function and activating [...]
Mutual exclusion statistics and data events in Gitools
We’re pleased to announce another incremental release of Gitools, version 2.2. Amongst the many improvements (listed at the bottom of this post) we’d like to highlight the [...]
How to perform a hierarchical clustering using interactive heatmaps in Gitools
In the latest version of Gitools, version 2.1, we have improved the clustering of heatmaps. Here we explain in detail on how to perform and interpret the [...]
Gitools 2.1 visits VizBi
We’d like to communicate two things: We have released a new version of Gitools which brings new capabilities. With these the new Gitools 2.1.0 in the suitcase, [...]
VIZBI 2014: Visualizing Biological Data
Two years ago I attended the VIZBI 2012 to present our latest work on and with Gitools, a tool we use to explore interactive heatmaps of genomics [...]
SVGMap 1.5.0 released
After some kind feedback from the Bergman Lab, we have released a new version of SVGmap, 1.5.0. In the Bergman Lab they are using SVGmap for displaying [...]
How to visualize multidimensional cancer genomics data?
A challenge to all cancer genomic studies is to visually explore the generated complex data in a meaningful way to extract relevant knowledge. We have written a review on [...]
Gitools 1.8 for improved data managament and transfer
We have started to distribute Gitools in the version 1.8.x. This latest version include important new features in terms of communication of Gitools with other tools (i.e. [...]