2023

Mangiante L, ………………………, Gonzalez-Perez A, …………., Lopez-Bigas N,………………………, Foll M & Fernandez-Cuesta L

Nature Genetics doi: 10.1038/s41588-023-01321-1

Gonzalez S, Lopez-Bigas N, Gonzalez-Perez A

PLOS Genetics doi.org/10.1371/journal.pgen.1010634

2022

Arnedo-Pac C, Muiños F, Gonzalez-Perez A, Lopez-Bigas N

Pre-Print, doi: 10.1101/2022.09.14.507952

Pich O, Reyes-Salazar I, Gonzalez-Perez A & Lopez-Bigas N

Nature Communications, doi: 10.1038/s41467-022-31878-0

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Arnedo-Pac C, Lopez-Bigas N & Muiños F

Nature Biotechnology, DOI: 10.1038/s41587-021-01187-w

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Nadeu F,…, Lopez-Bigas N, …., Campo E

Nature Medicine, DOI:10.1038/s41591-022-01927-8

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Palafox M,…, Gonzalez-Perez A,…, Sanchez-Guixé M,…, Lopez-Bigas N, …., Serra V

Nature Communications, DOI: 10.1038/s41467-022-32828-6

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Mangiante L, …., Lopez-Bigas N, …., Fernandez-Cuesta L

Journal of Thoracic Oncology, Doi:10.1016/j.jtho.2022.07.029

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Anderson CJ,…, Pich O,…, Lopez-Bigas N,…Aikten S

Pre-Print, Doi: 10.1101/2022.06.10.495644

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Palles C,…, Arnedo-Pac C,…, Lopez-Bigas N,…, de Voer R.

The American Journal of Human Genetics, DOI: 10.1016/j.ajhg.2022.03.018

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2021

Peri A, […] , Arnedo-Pac C,  […], Lopez-Bigas N, […], Samuels Y

JCI, doi: 10.1172/JCI129466

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Muiños F, Martínez-Jiménez F, Pich O,  Gonzalez-Perez A, Lopez-Bigas N

Nature, doi: 10.1038/s41586-021-03771-1

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Pich O, Cortes-Bullich A, Muiños F, Pratcorona M, Gonzalez-Perez A & Lopez-Bigas N

Nature Communications, DOI:10.1038/s41467-021-24858-3

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Bonet J, Chen M, Dabad M, Heath S, Gonzalez-Perez A, Lopez-Bigas N, Lagergren J

Bioinformatics, doi: 10.1093/bioinformatics/btab745

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Frigola J, Sabarinathan R, Gonzalez-Perez A, Lopez-Bigas N

Nucleic Acids Research, DOI:10.1093/nar/gkaa1219

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Zhang T, Joubert,  P […]  Gonzalez-Perez A, Martínez-Jiménez F, Lopez-Bigas N,[…]   Landi MT

Nature Genetics  doi:10.1038/s41588-021-00920-0

Aissa AF, Islam ABMMK, Ariss MM, Go CC, Rader AE, Conrardy RD, Gajda AM, Rubio-Perez C, Valyi-Nagy K, Pasquinelli M, Feldman LE, Green SJ, Lopez-Bigas N, Maxim Frolov MV & Benevolenskaya EV

Nature Communications, DOI:10.1038/s41467-021-21884-z

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Woolston A, Barber LJ, Griffiths B, Pich O, Lopez-Bigas N, Matthews N, Rao S, Watkins D, Chau I, Starling N, Cunningham D & Gerlinger M

Nature Ecology & Evolution, DOI:10.1038/s41559-021-01470-8

2020

Sentís I, Gonzalez S, Genescà E, García-Hernández V, Muiños F, Gonzalez C, López-Arribillaga E, Gonzalez J, Fernandez-Ibarrondo L, Mularoni L, Espinosa LL, Bellosillo B, Ribera JM, Bigas A, Gonzalez-Perez A & Lopez-Bigas N

Genome Biology, DOI:10.1186/s13059-020-02192-z

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Martínez-Jiménez F, Muiños F, Sentís I, Deu-Pons J, Reyes-Salazar I, Arnedo-Pac C, Mularoni L, Pich O, Bonet J, Kranas H, Gonzalez-Perez A, Lopez-Bigas N,

Nature Reviews Cancer,  DOI: 10.1038/s41568-020-0290-x

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McGuire AL, Gabriel S, Tishkoff SA, Wonkam A, Chakravarti A,  Furlong EEM , Treutlein B, Meissner A , Chang HY, López- Bigas N, Segal E,  Kim JS

Nature Reviews Genetics, DOI: 10.1038/s41576-020-0272-6

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Pich O, Reyes-Salazar I, Gonzalez-Perez A, Lopez-Bigas N

Preprint DOI:

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Martinez-Jimenez F, Muiños F, Lopez-Arribillaga E, Lopez-Bigas N, Gonzalez-Perez A

Nature Cancer doi.org/10.1038/s43018-019-0001-2

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Nature Cancer News and Views

Muiños F, Martinez-Jimenez F, Pich O, Gonzalez-Perez A, Lopez-Bigas N

Preprint doi: https://doi.org/10.1101/2020.06.03.130211

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Aitken SJ, Anderson CJ, Connor F, Pich O, Sundaram V, Feig C, Rayner TF, Lukk M, Aitken S, Luft J, Kentepozidou E, Arnedo-Pac C, Beentjes S, Davies SE, Drews RM, Ewing A, Kaiser VB, Khamseh A, López-Arribillaga E, Redmond AM, Santoyo-Lopez J, Sentís I, Talmane L, Yates AD, Semple CA, López-Bigas N, Flicek P, Odom DT, Taylor MS

Nature, DOI: 10.1038/s41586-020-2435-1

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Borgsmueller N, Bonet J, Marass F, Gonzalez-Perez A, Lopez-Bigas N, Beerenwinkel N

Bioinformatics, DOI:10.1093/bioinformatics/btaa599
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Wagner AH, Walsh B, Mayfield G, Tamborero D, Sonkin D, Krysiak K, Deu-Pons J, Duren RP, Gao J, McMurry J, Patterson S, del Vecchio Fitz C, Pitel BA, Sezerman OU, Ellrott K, Warner JL, Rieke DT, Aittokallio T, Cerami E, Ritter DI, Schriml LM, Freimuth RR, Haendel M, Raca G, Madhavan S, Baudis M, Beckmann JS, Dienstmann R, Chakravarty D, Li XS, Mockus S, Elemento O, Schultz N, Lopez-Bigas N, Lawler M, Goecks J, Griffith M, Griffith OL, A. Margolin AA & Variant Interpretation for Cancer Consortium

Nature Genetics, doi: 10.1038/s41588-020-0603-8

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Alexandrov LB, Kim J, Haradhvala NJ, Huang MN, Tian Ng AW, Wu Y, Boot A, Covington KR, Gordenin DA, Bergstrom EN, Islam SMA, Lopez-Bigas N, Klimczak LJ, McPherson JR, Morganella S, Sabarinathan R, Wheeler DA, Mustonen V; PCAWG Mutational Signatures Working Group, Getz G, Rozen SG, Stratton MR; PCAWG Consortium.

Nature, doi: 10.1038/s41586-020-1943-3

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Rheinbay E et al. , including Sabarinathan RMularoni LGonzalez-Perez APich OTamborero DLópez-Bigas N; PCAWG Consortium.

Nature, doi: 10.1038/s41586-020-1965-x

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ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, including  Sabarinathan RPich OGonzalez-Perez A, Rubio-Perez C, Tamborero D, Mularoni L, Deu-Pons J, Muinos F, Frigola J, Reyes-Salazar I.

Nature, doi: 10.1038/s41586-020-1969-6

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2019

Arnedo-Pac C, Mularoni L, Muiños FGonzalez-Perez ALopez-Bigas N

Bioinformatics doi: 10.1093/bioinformatics/btz501
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Pich O, Muiños F, Lolkema MP, Steeghs N, Gonzalez-Perez A, Lopez-Bigas N

Nature Genetics 
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Highlight in Nature Medicine

Gonzalez-Perez A, Sabarinathan R, Lopez-Bigas N

Cell DOI:10.1016/j.cell.2019.02.051

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Hernández-Sánchez M, Kotaskova J, Rodríguez AE, Radova L, Tamborero D, Abáigar M, Plevova K, Benito R, Tom N, Quijada-Álamo M, Bikos V, Martín AÁ, Pal K, García de Coca A, Doubek M, López-Bigas N, Hernández-Rivas JM, Pospisilova S.

Leukemia.  doi: 10.1038/s41375-018-0255-1

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2018

Pich O, Muiños F, Sabarinathan R, Reyes-Salazar I, Gonzalez-Perez A, Lopez-Bigas N

Cell doi:10.1016/j.cell.2018.10.004

Cell Preview
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Tamborero D, Rubio-Perez C, Deu-Pons J, Schroeder MP, Vivancos A, Rovira A, Tusquets I, Albanell J, Rodon J, Tabernero J, de Torres C, Dienstmann R, Gonzalez-Perez A, Lopez-Bigas N

Genome Medicine doi:  10.1186/s13073-018-0531-8

ON MEDICINE BLOG
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Tamborero D, Rubio-Perez C, Muinos F, Sabarinathan R, Piulats JMM, Muntasell A, Dientsmann R, Lopez-Bigas N, Gonzalez-Perez A

Clinical Cancer Research doi:10.1158/1078-0432.CCR-17-3509

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Mateo J, Chakravarty D, Dienstmann R, Jezdic S, Gonzalez-Perez A, Lopez-Bigas N, Ng CKY, Bedard PL, Tortora G, Douillard JY, Van Allen EM, Schultz N, Swanton C, André F, Pusztai L.

Annals of Oncology. 2018 doi: 10.1093/annonc/mdy263.

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Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Ng PK, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L.

Cell. 2018 doi: 10.1016/j.cell.2018.02.060.

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Martínez-Ricarte F, Mayor R, Martínez-Sáez E, Rubio-Pérez C, Pineda E, Cordero E, Cicuéndez M, Poca MA, López-Bigas N, Ramon Y Cajal S, Vieito M, Carles J, Tabernero J, Vivancos A, Gallego S, Graus F, Sahuquillo J, Seoane J.

Clinical Cancer Research. 2018 doi: 10.1158/1078-0432.CCR-17-3800.

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2017

Frigola J, Sabarinathan R, Mularoni L, Muiños F, Gonzalez-Perez A, López-Bigas N

Nature Genetics doi:10.1038/ng.3991

NATURE GENETICS NEWS & VIEWS
CELL SYSTEMS: Principles of Systems Biology
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Sabarinathan R, Pich O, Martincorena I, Rubio-Perez C, Juul M, Wala J, Schumacher S, Shapira O, Sidiropoulos N, Waszak S, Tamborero D, Mularoni L, Rheinbay E, Hornshoj H, Deu-Pons J, Muinos F, Bertl J, Guo Q, Weischenfeldt J, Korbel JO, Getz G, Campbell PJ, Pedersen JS, Beroukhim R, Perez-Gonzalez A, Lopez-Bigas N, PCAWG Drivers and Functional Interpretation Group, ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Net

Preprint doi: 10.1101/190330

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Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, Jones MR, Bilski RL, Lesurf R, Feng Y, Shah NM, Bonakdar M, Trani L, Matlock M, Ramu A, Campbell KM, Spies GC, Graubert AP, Gangavarapu K, Eldred JM, Larson DE, Walker JR, Good BM, Wu C, Su AI, Dienstmann R, Margolin A, Tamborero D, Lopez-Bigas N, Jones SJM, Bose R, Spencer DH, Wartman LD, Wilson RK, Mardis ER, Griffith OL.
Nature Genetics, 2017 doi:10.1038/ng.3774

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Hayward NK, Wilmott JS, Waddell N, Johansson PA, Field MA, Nones K, Patch AM, Kakavand H, Alexandrov LB, Burke H, Jakrot V, Kazakoff S, Holmes O, Leonard C, Sabarinathan R, Mularoni L, Wood S, Xu Q, Waddell N, Tembe V, Pupo GM, De Paoli-Iseppi R, Vilain RE, Shang P, Lau LMS, Dagg RA, Schramm SJ, Pritchard A, Dutton-Regester K, Newell F, Fitzgerald A, Shang CA, Grimmond SM, Pickett HA, Yang JY, Stretch JR, Behren A, Kefford RF, Hersey P, Long GV, Cebon J, Shackleton M, Spillane AJ, Saw RPM, López-Bigas N, Pearson JV, Thompson JF, Scolyer RA, Mann GJ

Nature, 2017 doi:10.1038/nature22071

Karube K, Enjuanes A, Dlouhy I, Jares P, Martin-Garcia D, Nadeu F, Ordóñez GR, Rovira J, Clot G, Royo C, Navarro A, Gonzalez-Farre B, Vaghefi A, Castellano G, Rubio-Perez C, Tamborero D, Briones J, Salar A, Sancho JM, Mercadal S, Gonzalez-Barca E, Escoda L0, Miyoshi H, Ohshima K, Miyawaki K, Kato K, Akashi K, Mozos A, Colomo L, Alcoceba M, Valera A, Carrió A, Costa D, Lopez-Bigas N, Schmitz R, Staudt LM, Salaverria I, López-Guillermo A, Campo E

Leukemia. 2017 DOI: 10.1038/leu.2017.251

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Porta-Pardo E, Kamburov A, Tamborero D, Pons T, Grases D, Valencia A, Lopez-Bigas N, Getz G, Godzik A

Nat Methods. 2017. doi: 10.1038/nmeth.4364.

2016

Carlota Rubio-Perez, Jordi Deu-Pons, David Tamborero, Nuria Lopez-Bigas, Abel Gonzalez-Perez
Genome Medicine 2016 8:98, DOI: 10.1186/s13073-016-0349-1

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Radhakrishnan Sabarinathan, Loris Mularoni, Jordi Deu-Pons, Abel Gonzalez-Perez, Nuria Lopez-Bigas
Nature 2016, 532, 264-267 (14 April 2016) doi:10.1038/nature17661

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NATURE NEWS & VIEWS
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Frigola J, Iturbide A, Lopez-Bigas N, Peiro S, Gonzalez-Perez A.
Oncotarget. 2016 Apr 15. doi:10.18632/oncotarget.8752.

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Iorio F*, Knijnenburg TA*, Vis DJ*, Bignell GR*, Menden MP*, Schubert M, Aben N, Gonçalves E, Barthorpe S, Lightfoot H, Greninger P, van Dyk E, Chang H, de Silva H, Heyn HA, Deng X, Egan RK, Liu Q, Mironenko T, Mitropoulos X, Richardson L, Wang J, Zhang T, Moran S, Saylos S, Soleimani M, Tamborero D, Lopez-Bigas N, Ross-Macdonald P, Esteller M, Gray N, Haber DA, Stratton MR, Benes CH, Wessels LFA+, Saez-Rodriguez J+, McDermott U+, Garnett MJ+
Cell 166, 1-15, 2016

Loris Mularoni, Radhakrishnan Sabarinathan, Jordi Deu-Pons, Abel Gonzalez-Perez, Núria López-Bigas.
Genome Biology, 2016 17:128 DOI: 10.1186/s13059-016-0994-0

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2015

Carlota Rubio-Perez#, David Tamborero#, Michael P. Schroeder, Albert A. Antolin, Jordi Deu-Pons, Christian Perez-Llamas, Jordi Mestres, Abel Gonzalez-Perez#, Nuria Lopez-Bigas#
Cancer Cell 27 (2015), pp. 382-396

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RESEARCH HIGHLIGHT IN NATURE REVIEWS DRUG DISCOVERY
HIGHLIGHT IN RESEARCH WATCH OF CANCER DISCOVERY
SCIENCE TRANSLATIONAL MEDICINE EDITOR’S CHOICE

Puente XS, Beà S, Valdés-Mas R, Villamor N, Gutiérrez-Abril J, Martín-Subero JI, Munar M, Rubio-Pérez C, Jares P, Aymerich M, Baumann T, Beekman R, Belver L, Carrio A, Castellano G, Clot G, Colado E, Colomer D, Costa D, Delgado J, Enjuanes A, Estivill X, Ferrando AA, Gelpí JL, González B, González S, González M, Gut M, Hernández-Rivas JM, López-Guerra M, Martín-García D, Navarro A, Nicolás P, Orozco M, Payer ÁR, Pinyol M, Pisano DG, Puente DA, Queirós AC, Quesada V, Romeo-Casabona CM, Royo C, Royo R, Rozman M, Russiñol N, Salaverría I, Stamatopoulos K, Stunnenberg HG, Tamborero D, Terol MJ, Valencia A, López-Bigas N, Torrents D, Gut I, López-Guillermo A, López-Otín C, Campo E
Nature. 2015 Jul 22. doi: 10.1038/nature14666.

Mutation Consequences and Pathway Analysis working group of the International Cancer Genome Consortium.
Nat Methods. 2015 Jun 30;12(7):615-21. doi: 10.1038/nmeth.3440.

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Gallardo F, Padrón A, Garcia-Carbonell R, Rius C, González-Perez A, Arumí-Uria M, Iglesias M, Nonell L, Bellosillo B, Segura S, Pujol RM, Lopez-Bigas N, Bertran J, Bigas A, Espinosa L.
Oncotarget. 2015 Apr 20;6(11):9284-94.

Leiserson MD, Vandin F, Wu HT, Dobson JR, Eldridge JV, Thomas JL, Papoutsaki A, Kim Y, Niu B, McLellan M, Lawrence MS, Gonzalez-Perez A, Tamborero D, Cheng Y, Ryslik GA, Lopez-Bigas N, Getz G, Ding L, Raphael BJ.
Nat Genet. 2015 Feb;47(2):106-14. doi: 10.1038/ng.3168. Epub 2014 Dec 15.

Chiara Di Vona, Daniela Bezdan, Abul BMMK Islam, Eulàlia Salichs, Nuria López-Bigas, Stephan Ossows, Susana de la Luna
Molecular Cell 57 (2015), pp. 506-520

B Barneda-Zahonero, O Collazo, A Azagra, I Fernández-Duran, J Serra-Musach, Abul BMMK Islam, N Vega-García, R Malatesta, M Camós, A Gómez, L Román-González, AVidal, N López-Bigas , A Villanueva, M Esteller, M Parra
Cell death & disease 6 (2), e1635