As some already may know, Gitools has been integrated with GenomeSpace. Together with the GenomeSpace team we have set up a tutorial that demonstrates the power behind the [...]

One of the current challenges of oncogenomics is to elucidate which of the aberrations observed in the cancer genome is involved in the disease and which of them [...]

A challenge to all cancer genomic studies is to visually explore the generated complex data in a meaningful way to extract relevant knowledge. We have written a review on that [...]

We have started to distribute Gitools in the version 1.8.x. This latest version include important new features in terms of communication of Gitools with other tools (i.e. IGV, [...]

[…]

We have worked during the last years on assessing the functional impact of non-synonymous variants (nsSNVs). As a result, we have published two new approaches Condel and transFIC. [...]

We have recently published transFIC, a computational method to assess the functional impact of somatic cancer mutations (see this post). To evaluate the performance of transFIC we needed [...]

Projects that sequence the genomes of a cohort of tumor samples are faced with the challenge of deciding which somatic mutations are relevant to tumor development (drivers). The [...]

This post is to share with you the poster describing “Systematic identification of cancer drivers across tumor types in IntOGen” that was presented last week at the Cambridge Research [...]

This post is to share with you the poster describing “TransFIC and OncodriveFM: Tools for the analysis of cancer sequencing data” that was presented last week at the Cambridge [...]