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OncodriveCLUSTL

One of the main goals of cancer research is the identification of the genomic elements that drive tumorigenesis. OncodriveCLUSTL is a new nucleotide sequence-based clustering algorithm to detect cancer drivers in genomic regions. OncodriveCLUSTL is based on a local background model derived from the nucleotide context mutational probabilities of the chort under study. Our method is able to identify well-known cancer drivers in coding regions. It can be applied to non-coding regions and non-human data. You can check the full results in our publication Arnedo-Pac C et al., 2019. OncodriveCLUSTL: a sequence-based clustering method to identify cancer drivers. Bioinformatics. pii: btz501. doi: 10.1093/bioinformatics/btz501.


This web resource is intended for a limited use of OncodriveCLUSTL and it does not provide full functionality. You can download and execute the code using its repository: https://bitbucket.org/bbglab/oncodriveclustl.

Examples

TCGA PAAD (CDS)

Job details
Created on 2019-04-30 12:33:41

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