Tools

/Tools
Tools 2016-11-02T17:29:00+00:00

Intogen

A discovery tool for cancer researchers

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Cancer Genome Interpreter

Platform to facilitate the interpretation of alterations in a patient’s tumor.

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OncoPaD

web-tool for the rational design of cancer NGS panels based on mutational data

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OncodriveFML

a method to analyze the pattern of somatic mutations across tumors in both coding and non-coding genomic regions to identify signals of positive selection

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Gitools

Framework for the interactive visualization of genomic data heatmaps.

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OncodriveFM

Method to identify genes bearing mutations with significant shift towards high functional impact across a cohort of tumos (FMbias), which are candidates to function as cancer drivers.

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OncodriveROLE

A method to classify cancer driver genes into to Activating or Loss of Function roles.

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OncodriveCLUST

A method to identify genes in which mutations accumulate within specific regions of the protein

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Condel

A method to integrate the output of various methods to identify deleterious non-synonymous variants

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Transfic

A method to transform Functional Impact scores taking into account the differences in basal tolerance to germline SNVs of genes that belong to different functional classes

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SLEA

Method to analyze the collective transcriptional status of gene modules across samples

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OncodriveCIS

A method to identify genes that accumulate copy number alterations important for tumour development

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jHeatmap

Javascript library to create interactive heatmaps within webpages

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