13:26:39 INFO: Loading regions
13:26:56 INFO: Building regions tree
13:26:56 INFO: [1 of 20763]
13:27:09 INFO: [7333 of 20763]
13:27:23 INFO: [14665 of 20763]
13:27:35 INFO: [20763 of 20763]
13:27:35 INFO: Mapping mutations
13:27:36 WARNING: There are 2 errors at skin.txt.
13:27:36 WARNING: Validation error at line 1930 column 3: ALT. [value:'G' validator:'match("^[ACTG-]*$",x) and r[2]!=x']
13:27:36 WARNING: Validation error at line 1939 column 3: ALT. [value:'T' validator:'match("^[ACTG-]*$",x) and r[2]!=x']
13:27:36 INFO: Computing global signature
13:27:44 INFO: Computing statistics
13:27:47 INFO: [1 of 76]
13:28:02 INFO: [37 of 76]
13:28:08 INFO: [73 of 76]
13:28:12 INFO: [76 of 76]
13:28:12 INFO: Computing multiple test correction
/projects_bg/bg/soft/anaconda3/envs/oncodrivefml_master/lib/python3.5/site-packages/oncodrivefml/main.py:215: FutureWarning: sort(columns=....) is deprecated, use sort_values(by=.....)
results_concat.sort('pvalue', 0, inplace=True)
13:28:12 INFO: Creating figures
/projects_bg/bg/soft/anaconda3/envs/oncodrivefml_master/lib/python3.5/site-packages/oncodrivefml/qqplot.py:281: FutureWarning: sort(columns=....) is deprecated, use sort_values(by=.....)
data.sort(columns=['observed'], inplace=True)
/projects_bg/bg/soft/anaconda3/envs/oncodrivefml_master/lib/python3.5/site-packages/oncodrivefml/qqplot.py:344: FutureWarning: sort(columns=....) is deprecated, use sort_values(by=.....)
grouped.sort(columns=['y', 'x'], inplace=True, ascending=[False, False])
/projects_bg/bg/soft/anaconda3/envs/oncodrivefml_master/lib/python3.5/site-packages/oncodrivefml/qqplot.py:126: FutureWarning: sort(columns=....) is deprecated, use sort_values(by=.....)
self._data.sort(columns=['observed'], inplace=True)
13:28:14 INFO: Done